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The vertical order of organisms shown on the branches is largely arbitrary. -The timing of each divergence is shown by the position of its node on a timeline (or sometimes by the use of a scalebar).2 phylogenetic-trees-pogil-answers nucleotide substitution models; the inference goals involving both tree topology and branch length, and the huge number of possible trees for a given sample of a very modest number of OTUs, which implies that fmding the best tree(s) to describe the genetic data for each OTU is computationally demanding.Key Ideas. Evolution is not a linear process, but rather a branching process derived from a common ancestor to modern day organisms. Organisms are grouped into a “clade” based on their...Phylogenetic Tree. a diagram designed to reveal evolutionary relationships among DNA or protein sequences by grouping organisms in terms of relative recency (time) of common ancestry. Branch Order. the closer two organisms are to a branch, the closer their relationship. 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